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DNA Surveillance

Species identification with DNA
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General details for dataset 'Ziph Ctrl Vs3.1'

Loci: mtDNA control Region (=D-Loop)
Domain: Ziphiidae Vs3.1
Alignment: 43 sequences, 476 sites
Alignment scoring
-ACGT
A1.0-2.0-1.0-2.0
C-2.01.0-2.0-1.0
G-1.0-2.01.0-2.0
T-2.0-1.0-2.01.0
Create/extend = -3.0/-1.7
Substitution model
-ACGT
A-1.02.01.0
C1.0-1.02.0
G2.01.0-1
T1.02.01-
(A,G,C,T) = (0.30751, 0.22645, 0.13893, 0.32711)

Sequence details

Main sequences
IDNameGroup
MbiSAC13093 Sowerby's beaked whaleMesoplodon bidens
MbiSAC1880 Sowerby's beaked whaleMesoplodon bidens
MbTMAG1593 Andrew's beaked whaleMesoplodon bowdoni
MboNMNZ619 Andrew's beaked whaleMesoplodon bowdoni
McaSW1127 Hubb's beaked whaleMesoplodon carlhubbsi
McaSW1154 Hubb's beaked whaleMesoplodon carlhubbsi
MdeNZ01.MD densebeaked whaleMesoplodon densirostris
MdeNHMUK densebeaked whaleMesoplodon densirostris
MeuSW4120 Gervais' beaked whaleMesoplodon europaeus
MeuSW3853 Gervais' beaked whaleMesoplodon europaeus
Mgin01.MD ginkgo-toothed beaked whaleMesoplodon ginkgodens
MgiTSM8744 ginkgo-toothed beaked whaleMesoplodon ginkgodens
MgrNZ11.MD Gray's beaked whaleMesoplodon grayi
MgrNZ05.MD Gray's beaked whaleMesoplodon grayi
MheNZ02.MD Hector's beaked whaleMesoplodon hectori
MhNMNZ2173 Hector's beaked whaleMesoplodon hectori
MlayS18078 straptooth whaleMesoplodon layardii
MlaySA9788 straptooth whaleMesoplodon layardii
MmiSW4972 True's beaked whaleMesoplodon mirus
MmiSW4968 True's beaked whaleMesoplodon mirus
MpeJCR1926 lesser beaked whaleMesoplodon peruvianus
MpeLA95654 lesser beaked whaleMesoplodon peruvianus
USNM504853 Perrin's beaked whaleMesoplodon perrini
MpiTMMCC75 Perrin's beaked whaleMesoplodon perrini
MstSW10402 Stejneger's beaked whaleMesoplodon stejnegeri
MstSW9491 Stejneger's beaked whaleMesoplodon stejnegeri
MtrNMNZ546 spade-toothed whaleMesoplodon traversii
MNHNC1156 spade-toothed whaleMesoplodon traversii
IpMZUF1956 Longman's beaked whaleIndopacetus pacificus
IpaQMJ2106 Longman's beaked whaleIndopacetus pacificus
HplNZ04.MD southern bottlenose whaleHyperoodon planifrons
HplNZ01.MD southern bottlenose whaleHyperoodon planifrons
HamSH9711D northern bottlenose whaleHyperoodon ampullatus
HamSH9601A northern bottlenose whaleHyperoodon ampullatus
ZcaNZ11.MD Cuvier's beaked whaleZiphius cavirostris
ZcaSAC0356 Cuvier's beaked whaleZiphius cavirostris
TshNZ02.MD Shepherd's beaked whaleTasmacetus shepherdi
TshNZ01.MD Shepherd's beaked whaleTasmacetus shepherdi
BarNZ02.MD Arnoux's beaked whaleBeradius arnuxii
BarPEM28 Arnoux's beaked whaleBeradius arnuxii
BbaBC9220 Baird's beaked whaleBerardius bairdii
BbaSW4965 Baird's beaked whaleBerardius bairdii
Outgroup sequences
IDNameGroup
KbreNZ01SP pygmy sperm whaleKogia breviceps