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DNA Surveillance

Species identification with DNA
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General details for dataset 'Phoc CytB Vs4.3'

Loci: Cytochrome B
Domain: Phocoenidae Vs4.3
Alignment: 19 sequences, 368 sites
Alignment scoring
-ACGT
A1.0-1.0-1.0-1.0
C-1.01.0-1.0-1.0
G-1.0-1.01.0-1.0
T-1.0-1.0-1.01.0
Create/extend = -3.0/-1.0
Substitution model
-ACGT
A-1.02.01.0
C1.0-1.02.0
G2.01.0-1
T1.02.01-
(A,G,C,T) = (0.30751, 0.22645, 0.13893, 0.32711)

Sequence details

Main sequences
IDNameGroup
Adio1.PR spectacled porpoiseAustralophocaena dioptrica
AdioZ7014 spectacled porpoiseAustralophocaena dioptrica
AdioZ981 spectacled porpoiseAustralophocaena dioptrica
Npho0.PR finless porpoiseNeophocaena phocaenoides
Npho9.HH finless porpoiseNeophocaena phocaenoides
Pdal8.PR Dall's porpoisePhocoenoides dalli
Pdal9.PR Dall's porpoisePhocoenoides dalli
PdalZ4730 Dall's porpoisePhocoenoides dalli
PdalZ6208 Dall's porpoisePhocoenoides dalli
Ppho3.PR harbour porpoisePhocoena phocoena
Ppho3.UA harbour porpoisePhocoena phocoena
Ppho9.MM harbour porpoisePhocoena phocoena
PphoU09683 harbor porpoisePhocoena phocoena
Psin1.LD vaquitaPhocoena sinus
Psin7.PR vaquitaPhocoena sinus
Pspi4.MM Burmeister's porpoisePhocoena spinipinnis
Pspi6.PR Burmeister's porpoisePhocoena spinipinnis
PspiCH01 Burmeister's porpoisePhocoena spinipinnis
Outgroup sequences
IDNameGroup
Dleu1.UA BelugaDelphinapterus leucas