title logo

DNA Surveillance

Species identification with DNA
Witness for Whales Home About How to Use The Science Links and Publications Data Ownership
Search Cluster (Simple) Cluster (Advanced) Maximum Likelihood Example Data

General details for dataset 'Phoc CytB Vs3.1'

Loci: Cytochrome B
Domain: Phocoenidae Vs3.1
Alignment: 13 sequences, 368 sites
Alignment scoring
-ACGT
A1.0-1.0-1.0-1.0
C-1.01.0-1.0-1.0
G-1.0-1.01.0-1.0
T-1.0-1.0-1.01.0
Create/extend = -3.0/-1.0
Substitution model
-ACGT
A-1.02.01.0
C1.0-1.02.0
G2.01.0-1
T1.02.01-
(A,G,C,T) = (0.30751, 0.22645, 0.13893, 0.32711)

Sequence details

IDNameGroup
Npho9.HH Finless PorpoiseNeophocaena phocaenoides
Npho0.PR Finless PorpoiseNeophocaena phocaenoides
Ppho3.PR Harbour PorpiosePhocoena phocoena
Ppho9.MM Harbour PorpoisePhocoena phocoena
Ppho3.UA Harbour PorpoisePhocoena phocoena
Psin1.LD VaquitaPhocoena sinus
Psin7.PR VaquitaPhocoena sinus
Pspi6.PR Burmeister's PorpoisePhocoena spinipinnis
Pspi4.MM Burmeister's PorpoisePhocoena spinipinnis
Pdal8.PR Dall's PorpoisePhocoenoides dalli
Pdal9.PR Dall's PorpoisePhocoenoides dalli
Adio1.PR Spectacled PorpoiseAustralophocaena dioptrica
Dleu1.UA Beluga WhaleDelphinapterus leucas