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DNA Surveillance

Species identification with DNA
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Search Cluster (Simple) Cluster (Advanced) Maximum Likelihood Example Data

General details for dataset 'BPs1 CR'

Loci: Control Region
Domain: Brazilian Psittacidae v1.0 (non curated)
Alignment: 149 sequences, 1494 sites
Alignment scoring
-ACGT
A1.0-1.0-1.0-1.0
C-1.01.0-1.0-1.0
G-1.0-1.01.0-1.0
T-1.0-1.0-1.01.0
Create/extend = -2.9/-0.7
Substitution model
-ACGT
A-1.01.01.0
C1.0-1.01.0
G1.01.0-1
T1.01.01-
(A,G,C,T) = (0.25, 0.25, 0.25, 0.25)

Sequence details

IDNameGroupGenBank
33341569 Amazona aestivaAmazona 33341569
33313902 Amazona aestivaAmazona 33313902
60735554 Amazona brasiliensisAmazona 60735554
60735557 Amazona brasiliensisAmazona 60735557
60735555 Amazona brasiliensisAmazona 60735555
60735553 Amazona brasiliensisAmazona 60735553
60735552 Amazona brasiliensisAmazona 60735552
60735551 Amazona brasiliensisAmazona 60735551
60735550 Amazona brasiliensisAmazona 60735550
60735549 Amazona brasiliensisAmazona 60735549
60735548 Amazona brasiliensisAmazona 60735548
60735556 Amazona brasiliensisAmazona 60735556
33313896 Anodorhynchus hyacinthinusAnodorhynchus 33313896
33313897 Anodorhynchus hyacinthinusAnodorhynchus 33313897
33341568 Anodorhynchus leariAnodorhynchus 33341568
114150013 Anodorhynchus leariAnodorhynchus 114150013
114150014 Anodorhynchus leariAnodorhynchus 114150014
33313895 Anodorhynchus leariAnodorhynchus 33313895
33313899 Ara araraunaAra 33313899
33313898 Ara araraunaAra 33313898
33313907 Ara severaAra 33313907
33313908 Ara severaAra 33313908
33313905 Aratinga aureaAratinga 33313905
33313906 Aratinga aureaAratinga 33313906
37784358 Aratinga auricapillaAratinga 37784358
37784357 Aratinga auricapillaAratinga 37784357
37784359 Aratinga auricapillaAratinga 37784359
37784356 Aratinga auricapillaAratinga 37784356
37784355 Aratinga auricapillaAratinga 37784355
37784354 Aratinga auricapillaAratinga 37784354
37784353 Aratinga auricapillaAratinga 37784353
33313911 Aratinga cactorumAratinga 33313911
33313910 Aratinga cactorumAratinga 33313910
37784361 Aratinga jandayaAratinga 37784361
37784360 Aratinga jandayaAratinga 37784360
37784362 Aratinga jandayaAratinga 37784362
37784363 Aratinga jandayaAratinga 37784363
37784364 Aratinga jandayaAratinga 37784364
33313909 Aratinga leucophthalmusAratinga 33313909
33341570 Aratinga leucophthalmusAratinga 33341570
37784350 Aratinga solstitialisAratinga 37784350
37784351 Aratinga solstitialisAratinga 37784351
37784352 Aratinga solstitialisAratinga 37784352
37784349 Aratinga solstitialisAratinga 37784349
37784368 Aratinga weddelliiAratinga 37784368
37784365 Aratinga weddelliiAratinga 37784365
37784366 Aratinga weddelliiAratinga 37784366
37784367 Aratinga weddelliiAratinga 37784367
114150010 Cyanopsitta spixiiCyanopsitta 114150010
114150009 Cyanopsitta spixiiCyanopsitta 114150009
114150012 Cyanopsitta spixiiCyanopsitta 114150012
33313904 Cyanopsitta spixiiCyanopsitta 33313904
33313903 Cyanopsitta spixiiCyanopsitta 33313903
33341573 Deroptyus accipitrinusCyanopsitta 33341573
33313912 Diopsittaca nobilisDiopsittaca 33313912
33313913 Diopsittaca nobilisDiopsittaca 33313913
33313901 Guaruba guaroubaGuaruba 33313901
33313900 Guaruba guaroubaGuaruba 33313900
33341572 Myiopsitta monachusMyiopsitta 33341572
33341571 Myiopsitta monachusMyiopsitta 33341571
33313921 Nandayus nendayNandayus 33313921
33313920 Nandayus nendayNandayus 33313920
33313914 Orthopsittaca manilataOrthopsittaca 33313914
33313915 Orthopsittaca manilataOrthopsittaca 33313915
33313917 Primolius auricollisPrimolius 33313917
33313916 Primolius auricollisPrimolius 33313916
33313922 Primolius couloniPrimolius 33313922
33313919 Primolius maracanaPrimolius 33313919
33313918 Primolius maracanaPrimolius 33313918
58866684 Pyrrhura albipectusPyrrhura 58866684
58866683 Pyrrhura albipectusPyrrhura 58866683
58866628 Pyrrhura amazonumPyrrhura 58866628
58866630 Pyrrhura amazonumPyrrhura 58866630
58866631 Pyrrhura amazonumPyrrhura 58866631
58866690 Pyrrhura cruentataPyrrhura 58866690
58866691 Pyrrhura cruentataPyrrhura 58866691
58866641 Pyrrhura einsenmanniPyrrhura 58866641
58866642 Pyrrhura eisenmanniPyrrhura 58866642
58866659 Pyrrhura emmaPyrrhura 58866659
58866658 Pyrrhura emmaPyrrhura 58866658
58866657 Pyrrhura emmaPyrrhura 58866657
58866656 Pyrrhura emmaPyrrhura 58866656
58866655 Pyrrhura emmaPyrrhura 58866655
58866678 Pyrrhura frontalisPyrrhura 58866678
58866660 Pyrrhura griseipectusPyrrhura 58866660
58866661 Pyrrhura griseipectusPyrrhura 58866661
58866662 Pyrrhura griseipectusPyrrhura 58866662
58866663 Pyrrhura griseipectusPyrrhura 58866663
58866664 Pyrrhura griseipectusPyrrhura 58866664
58866679 Pyrrhura hoffmaniPyrrhura 58866679
58866680 Pyrrhura hoffmaniPyrrhura 58866680
58866676 Pyrrhura lepidaPyrrhura 58866676
58866674 Pyrrhura lepidaPyrrhura 58866674
58866667 Pyrrhura leucotisPyrrhura 58866667
58866666 Pyrrhura leucotisPyrrhura 58866666
58866665 Pyrrhura leucotisPyrrhura 58866665
58866685 Pyrrhura melanuraPyrrhura 58866685
58866689 Pyrrhura melanuraPyrrhura 58866689
58866688 Pyrrhura melanuraPyrrhura 58866688
58866687 Pyrrhura melanuraPyrrhura 58866687
58866686 Pyrrhura melanuraPyrrhura 58866686
58866673 Pyrrhura molinaePyrrhura 58866673
58866672 Pyrrhura molinaePyrrhura 58866672
58866669 Pyrrhura orcesiPyrrhura 58866669
58866668 Pyrrhura orcesiPyrrhura 58866668
58866675 Pyrrhura perlataPyrrhura 58866675
58866677 Pyrrhura perlataPyrrhura 58866677
58866614 Pyrrhura peruvianaPyrrhura 58866614
58866615 Pyrrhura peruvianaPyrrhura 58866615
58866650 Pyrrhura pfrimeriPyrrhura 58866650
58866651 Pyrrhura pfrimeriPyrrhura 58866651
58866652 Pyrrhura pfrimeriPyrrhura 58866652
58866653 Pyrrhura pfrimeriPyrrhura 58866653
58866654 Pyrrhura pfrimeriPyrrhura 58866654
33341574 Pyrrhura pictaPyrrhura 33341574
58866644 Pyrrhura pictaPyrrhura 58866644
58866648 Pyrrhura pictaPyrrhura 58866648
33341575 Pyrrhura pictaPyrrhura 33341575
58866649 Pyrrhura pictaPyrrhura 58866649
58866645 Pyrrhura pictaPyrrhura 58866645
58866646 Pyrrhura pictaPyrrhura 58866646
58866647 Pyrrhura pictaPyrrhura 58866647
58866643 Pyrrhura pictaPyrrhura 58866643
58866670 Pyrrhura rhodocephalaPyrrhura 58866670
58866671 Pyrrhura rhodocephalaPyrrhura 58866671
58866621 Pyrrhura roseifronsPyrrhura 58866621
58866627 Pyrrhura roseifronsPyrrhura 58866627
58866616 Pyrrhura roseifronsPyrrhura 58866616
58866617 Pyrrhura roseifronsPyrrhura 58866617
58866618 Pyrrhura roseifronsPyrrhura 58866618
58866619 Pyrrhura roseifronsPyrrhura 58866619
58866620 Pyrrhura roseifronsPyrrhura 58866620
58866622 Pyrrhura roseifronsPyrrhura 58866622
58866624 Pyrrhura roseifronsPyrrhura 58866624
58866625 Pyrrhura roseifronsPyrrhura 58866625
58866626 Pyrrhura roseifronsPyrrhura 58866626
58866623 Pyrrhura roseifronsPyrrhura 58866623
58866681 Pyrrhura rupicolaPyrrhura 58866681
58866682 Pyrrhura rupicolaPyrrhura 58866682
58866632 Pyrrhura snethlageaePyrrhura 58866632
58866640 Pyrrhura snethlageaePyrrhura 58866640
58866633 Pyrrhura snethlageaePyrrhura 58866633
58866634 Pyrrhura snethlageaePyrrhura 58866634
58866635 Pyrrhura snethlageaePyrrhura 58866635
58866636 Pyrrhura snethlageaePyrrhura 58866636
58866637 Pyrrhura snethlageaePyrrhura 58866637
58866638 Pyrrhura snethlageaePyrrhura 58866638
58866639 Pyrrhura snethlageaePyrrhura 58866639
58866629 Pyrrhura snethlageaePyrrhura 58866629