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DNA Surveillance

Species identification with DNA
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General details for dataset 'Phoc Ctrl Vs4.3'

Loci: mtDNA control Region (=D-Loop)
Domain: Phocoenidae Vs4.3
Alignment: 30 sequences, 355 sites
Alignment scoring
-ACGT
A1.0-1.0-1.0-1.0
C-1.01.0-1.0-1.0
G-1.0-1.01.0-1.0
T-1.0-1.0-1.01.0
Create/extend = -3.0/-1.0
Substitution model
-ACGT
A-1.02.01.0
C1.0-1.02.0
G2.01.0-1
T1.02.01-
(A,G,C,T) = (0.30751, 0.22645, 0.13893, 0.32711)

Sequence details

Main sequences
IDNameGroup
AdioTF5.PR spectacled porpoiseAustralophocaena dioptrica
NphoJPA.HY finless porpoiseNeophocaena phocaenoides
NphoJPC.HY finless porpoiseNeophocaena phocaenoides
NphoJPD.HY finless porpoiseNeophocaena phocaenoides
NphoJPE.HY finless porpoiseNeophocaena phocaenoides
NphoJPG.HY finless porpoiseNeophocaena phocaenoides
NphoNP6.PR finless porpoiseNeophocaena phocaenoides
PdalNP0.PR Dall's porpoisePhocoenoides dalli
PdalNP1.PR Dall's porpoisePhocoenoides dalli
PdalNP2.PR Dall's porpoisePhocoenoides dalli
PdalNP7.PR Dall's porpoisePhocoenoides dalli
PdalNP8.PR Dall's porpoisePhocoenoides dalli
PdalNP9.PR Dall's porpoisePhocoenoides dalli
PphoNA2.RT harbour porpoisePhocoena phocoena
PphoNA4.RT harbour porpoisePhocoena phocoena
PphoNA8.RT harbour porpoisePhocoena phocoena
PphoNP0.PR harbour porpoisePhocoena phocoena
PphoNP2.PR harbour porpoisePhocoena phocoena
PphoNP5.PR harbour porpoisePhocoena phocoena
PphoU09689 harbour porpoisePhocoena phocoena
PphoU09690 harbour porpoisePhocoena phocoena
PphoU09691 harbour porpoisePhocoena phocoena
PsinCA3.PR vaquitaPhocoena sinus
PspiPE4.PR Burmeister's porpoisePhocoena spinipinnis
PspiPE5.PR Burmeister's porpoisePhocoena spinipinnis
PspiPE6.PR Burmeister's porpoisePhocoena spinipinnis
PspiPE7.PR Burmeister's porpoisePhocoena spinipinnis
PspiPE8.PR Burmeister's porpoisePhocoena spinipinnis
PspiPE9.PR Burmeister's porpoisePhocoena spinipinnis
Outgroup sequences
IDNameGroup
DleuAR7.WL BelugaDelphinapterus leucas