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DNA Surveillance

Species identification with DNA
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General details for dataset 'Glo Ctrl Vs3.1'

Loci: mtDNA control Region (=D-Loop)
Domain: Globicephalinae + Orcininae Vs3.1
Alignment: 26 sequences, 406 sites
Alignment scoring
-ACGT
A1.0-2.0-1.0-2.0
C-2.01.0-2.0-1.0
G-1.0-2.01.0-2.0
T-2.0-1.0-2.01.0
Create/extend = -3.0/-1.7
Substitution model
-ACGT
A-1.02.01.0
C1.0-1.02.0
G2.01.0-1
T1.02.01-
(A,G,C,T) = (0.30751, 0.22645, 0.13893, 0.32711)

Sequence details

Main sequences
IDNameGroup
GmacAT1.LS short-finned pilot whaleGlobicephala macrorhynchus
GmacCA2.LS short-finned pilot whaleGlobicephala macrorhynchus
GmacTP3.LS short-finned pilot whaleGlobicephala macrorhynchus
GmacNZ13MD short-finned pilot whaleGlobicephala macrorhynchus
GmacNZ10MD short-finned pilot whaleGlobicephala macrorhynchus
GmacNZ11MD short-finned pilot whaleGlobicephala macrorhynchus
GmacNZ12MD short-finned pilot whaleGlobicephala macrorhynchus
GmelNA6.LS long-finned pilot whaleGlobicephala melas
GmelNA8.LS long-finned pilot whaleGlobicephala melas
GmelNA7.LS long-finned pilot whaleGlobicephala melas
GmelSWFSC long-finned pilot whaleGlobicephala melas
GmelNZ01MD long-finned pilot whaleGlobicephala melas
GgriMD.AV Risso's dolphinGrampus griseus
GgriNZ1.MD Risso's dolphinGrampus griseus
GgriJP4.DY Risso's dolphinGrampus griseus
PcraNZ1.MD false killer whalePseudorca crassidens
PeleFP1.MP melon-headed whalePeponocephala electra
OorcNP9.RH killer whaleOrcinus orca
OorcNZ1.MD killer whaleOrcinus orca
OorcNZ4.MD killer whaleOrcinus orca
OorcNZ5.MD killer whaleOrcinus orca
OorcNZ3.CO killer whaleOrcinus orca
Oorc9701NZ killer whaleOrcinus orca
Oorc00RS01 killer whaleOrcinus orca
Outgroup sequences
IDNameGroup
LalbNA5.FC white-beaked dolphinLagenorhynchus albirostris
LacuNF7.FC Atlantic white-sided dolphinLagenorhynchus acutus