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DNA Surveillance

Species identification with DNA
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General details for dataset 'Delph Sten Ctrl Vs4.3'

Loci: mtDNA control Region (=D-Loop)
Domain: Delphinidae + Stenoninae Vs4.3
Alignment: 66 sequences, 288 sites
Alignment scoring
-ACGT
A1.0-1.0-1.0-1.0
C-1.01.0-1.0-1.0
G-1.0-1.01.0-1.0
T-1.0-1.0-1.01.0
Create/extend = -3.0/-1.0
Substitution model
-ACGT
A-1.02.01.0
C1.0-1.02.0
G2.01.0-1
T1.02.01-
(A,G,C,T) = (0.30751, 0.22645, 0.13893, 0.32711)

Sequence details

Main sequences
IDNameGroup
DcapCA11PR common (long-beaked)Delphinus capensis
DcapCA3.PR common (long-beaked)Delphinus capensis
DcapCA4.PR common (long-beaked)Delphinus capensis
DcapCA5.PR common (long-beaked)Delphinus capensis
DcapCA6.PR common (long-beaked)Delphinus capensis
DcapCA7.PR common (long-beaked)Delphinus capensis
Ddel1 common (short-beaked)Delphinus delphis
DdelBS1.PR common (short-beaked)Delphinus delphis
DdelCA1.PR common (short-beaked)Delphinus delphis
DdelETP1PR common (short-beaked)Delphinus delphis
DdelMD1.AV common (short-beaked)Delphinus delphis
DdeltropZ4524 Delphinus delphis (tropicalis)Delphinus delphis
DdeltropZ4525 Delphinus delphis (tropicalis)Delphinus delphis
DdelVEN327 common (short-beaked)Delphinus delphis
Lhos001 Fraser'sLagenodelphis hosei
Lhos003 Fraser'sLagenodelphis hosei
Lhos571 Fraser'sLagenodelphis hosei
Lhos615 Fraser'sLagenodelphis hosei
LhosZ2594 Fraser'sLagenodelphis hosei
LhosZ452 Fraser'sLagenodelphis hosei
Satt1 Pantropical spottedStenella attenuata
Satt5 Pantropical spottedStenella attenuata
SattNP0.PR Pantropical spottedStenella attenuata
Sbre001 rough-toothedSteno bredanensis
SbreFP1.MP rough-toothedSteno bredanensis
SchiZ7886 Indo-pacific humpbackedSousa chinensis
SchiZ7887 Indo-pacific humpbackedSousa chinensis
SchiZ7890 Indo-pacific humpbackedSousa chinensis
SchiZ7893 Indo-pacific humpbackedSousa chinensis
SchiZ8927 Indo-pacific humpbackedSousa chinensis
SchiZ8929 Indo-pacific humpbackedSousa chinensis
Scly12 ClymeneStenella clymene
Scly8 ClymeneStenella clymene
SclyZ4185 ClymeneStenella clymene
SclyZ4530 ClymeneStenella clymene
Scoe06 stripedStenella coeruleoalba
Scoe17 stripedStenella coeruleoalba
ScoeMD1.AV stripedStenella coeruleoalba
SfColAm01 tucuxiSotalia fluviatalis
SfColCar01 tucuxiSotalia fluviatalis
Sfro1 Atlantic spottedStenella frontalis
Sfro11 Atlantic spottedStenella frontalis
SfroGU01030102 Atlantic spottedStenella frontalis
SfroNEPST877 Atlantic spottedStenella frontalis
SfrontCCIR0103 Atlantic spottedStenella frontalis
SfroVI366 Atlantic spottedStenella frontalis
Slon03FP01 spinnerStenella longirostris
Slon03FP20 spinnerStenella longirostris
Slon02FP35 spinnerStenella longirostris
Slon02FP38 spinnerStenella longirostris
Slon1 spinnerStenella longirostris
Slon5 spinnerStenella longirostris
TaduA1.JW bottlenose (aduncus)Tursiops aduncus
TaduA5.JW bottlenose (aduncus)Tursiops aduncus
TaduA7.JW bottlenose (aduncus)Tursiops aduncus
TaduSEAu1.LM bottlenose (aduncus)Tursiops aduncus
TaduSEAu3.LM bottlenose (aduncus)Tursiops aduncus
TaduSEAu5.LM bottlenose (aduncus)Tursiops aduncus
Ttr03BOI001 bottlenose (truncatus)Tursiops truncatus
Ttr03Kir11 bottlenose (truncatus)Tursiops truncatus
Ttr09 bottlenose (truncatus)Tursiops truncatus
TtruCCSwani bottlenose (truncatus)Tursiops truncatus
TtruT1.JW bottlenose (truncatus)Tursiops truncatus
TtruTA0.KP bottlenose (truncatus)Tursiops truncatus
Outgroup sequences
IDNameGroup
CeutC6.FP ChileanCephalorhynchus eutropia
LausZ4926 Peale'sLagenorhynchus australis