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DNA Surveillance

Species identification with DNA
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Search Cluster (Simple) Cluster (Advanced) Maximum Likelihood Example Data

General details for dataset 'Ziph CytB Vs4.3'

Loci: Cytochrome B
Domain: Ziphiidae Vs4.3
Alignment: 51 sequences, 384 sites
Alignment scoring
-ACGT
A1.0-2.0-1.0-2.0
C-2.01.0-2.0-1.0
G-1.0-2.01.0-2.0
T-2.0-1.0-2.01.0
Create/extend = -3.0/-1.7
Substitution model
-ACGT
A-1.02.01.0
C1.0-1.02.0
G2.01.0-1
T1.02.01-
(A,G,C,T) = (0.30751, 0.22645, 0.13893, 0.32711)

Sequence details

Main sequences
IDNameGroup
Bar02 Arnoux's beakedBerardius arnuxii
BarNMNZ580 Arnoux's beakedBerardius arnuxii
BbaBC9220 Baird's beakedBerardius bairdii
BbaiNP1.UA Baird's beakedBerardius bairdii
HamIC454 northern bottlenoseHyperoodon ampullatus
HamSH9717 northern bottlenoseHyperoodon ampullatus
Hpl01 southern bottlenoseHyperoodon planifrons
Hpl02 southern bottlenoseHyperoodon planifrons
IpacQJ2106 Longman's beakedIndopacetus pacificus
IpaMal001 Longman's beakedIndopacetus pacificus
LAM088901 Perrin's beakedMesoplodon perrini
MbiSW3854 Sowerby's beakedMesoplodon bidens
MbiSW3858 Sowerby's beakedMesoplodon bidens
MboSA18047 Andrews' beakedMesoplodon bowdoini
Mbow04 Andrews' beakedMesoplodon bowdoini
McaSW1154 Hubbs' beakedMesoplodon carlhubbsi
McaSW3804 Hubbs' beakedMesoplodon carlhubbsi
MdeNZ02 densebeakedMesoplodon densirostris
MdeSW4010 densebeakedMesoplodon densirostris
MeuSW4120 Gervais' beakedMesoplodon europaeus
MeuSW7443 Gervais' beakedMesoplodon europaeus
Mgin01 ginkgo-toothed beakedMesoplodon ginkgodens
MginNZ03 ginkgo-toothed beakedMesoplodon ginkgodens
Mgr29 Gray's beakedMesoplodon grayi
MgrH04 Gray's beakedMesoplodon grayi
MheSA16387 Hector's beakedMesoplodon hectori
MheTAS Hector's beakedMesoplodon hectori
Mlay04 straptoothMesoplodon layardii
Mlay13 straptoothMesoplodon layardii
MmiSW4968 True's beakedMesoplodon mirus
MmiSW4972 True's beakedMesoplodon mirus
MNHNC1156 spade-toothedMesoplodon traversii
MpeJCR1926 lesser beakedMesoplodon peruvianus
Mper1.MM lesser beakedMesoplodon peruvianus
MstSW4962 Stejneger's beakedMesoplodon stejnegeri
MstSW6481 Stejneger's beakedMesoplodon stejnegeri
Mtrav-MGM spade-toothedMesoplodon traversii
MtrNMNZ546 spade-toothedMesoplodon traversii
MZUF1956 Longman's beakedIndopacetus pacificus
PEM1960 Longman's beakedIndopacetus pacificus
PEM292 Longman's beakedIndopacetus pacificus
TMMC.C75 Perrin's beakedMesoplodon perrini
Tsh02 Shepherd's beakedTasmacetus shepherdi
Tsh04 Shepherd's beakedTasmacetus shepherdi
TsheSP4.HH Shepherd's beakedTasmacetus shepherdi
USNM504259 Perrin's beakedMesoplodon perrini
USNM504260 Perrin's beakedMesoplodon perrini
USNM504853 Perrin's beakedMesoplodon perrini
ZcaNC0296 Cuvier's beakedZiphius cavirostris
ZcaSW8398 Cuvier's beakedZiphius cavirostris
Outgroup sequences
IDNameGroup
Kbre0.MM pygmy sperm whaleKogia breviceps