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DNA Surveillance

Species identification with DNA
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General details for dataset 'Phoc Ctrl Vs3.1'

Loci: mtDNA control Region (=D-Loop)
Domain: Phocoenidae Vs3.1
Alignment: 45 sequences, 355 sites
Alignment scoring
-ACGT
A1.0-2.0-1.0-2.0
C-2.01.0-2.0-1.0
G-1.0-2.01.0-2.0
T-2.0-1.0-2.01.0
Create/extend = -3.0/-1.7
Substitution model
-ACGT
A-1.02.01.0
C1.0-1.02.0
G2.01.0-1
T1.02.01-
(A,G,C,T) = (0.30751, 0.22645, 0.13893, 0.32711)

Sequence details

Main sequences
IDNameGroup
NphoJPG.HY Finless porpoiseNeophocaena phocaenoides
NphoJPI.HY Finless porpoiseNeophocaena phocaenoides
NphoJPB.HY Finless porpoiseNeophocaena phocaenoides
NphoJPE.HY Finless porpoiseNeophocaena phocaenoides
NphoJPH.HY Finless porpoiseNeophocaena phocaenoides
NphoJPD.HY Finless porpoiseNeophocaena phocaenoides
NphoJPJ.HY Finless porpoiseNeophocaena phocaenoides
NphoJPF.HY Finless porpoiseNeophocaena phocaenoides
NphoJPC.HY Finless porpoiseNeophocaena phocaenoides
NphoJPA.HY Finless porpoiseNeophocaena phocaenoides
NphoNP6.PR Finless porpoiseNeophocaena phocaenoides
PsinCA3.PR VaquitaPhocoena sinus
PspiPE9.PR Burmeister's porpoisePhocoena spinipinnis
PspiPE4.PR Burmeister's porpoisePhocoena spinipinnis
PspiPE8.PR Burmeister's porpoisePhocoena spinipinnis
PspiPE5.PR Burmeister's porpoisePhocoena spinipinnis
PspiPE6.PR Burmeister's porpoisePhocoena spinipinnis
PspiPE7.PR Burmeister's porpoisePhocoena spinipinnis
PphoNP5.PR harbour porpoisePhocoena phocoena
PphoNP7.PR harbour porpoisePhocoena phocoena
PphoNP4.PR harbour porpoisePhocoena phocoena
PphoNP2.PR harbour porpoisePhocoena phocoena
PphoNA7.RT harbour porpoisePhocoena phocoena
PphoNP6.PR harbour porpoisePhocoena phocoena
PphoNP1.PR harbour porpoisePhocoena phocoena
PphoNP0.PR harbour porpoisePhocoena phocoena
PphoNA1.RT harbour porpoisePhocoena phocoena
PphoNA4.RT harbour porpoisePhocoena phocoena
PphoNA6.RT harbour porpoisePhocoena phocoena
PphoNP8.PR harbour porpoisePhocoena phocoena
PphoNA9.RT harbour porpoisePhocoena phocoena
PphoNP9.PR harbour porpoisePhocoena phocoena
PphoNP3.PR harbour porpoisePhocoena phocoena
PphoNA2.RT harbour porpoisePhocoena phocoena
PphoNA5.RT harbour porpoisePhocoena phocoena
PphoNA3.RT harbour porpoisePhocoena phocoena
PphoNA8.RT harbour porpoisePhocoena phocoena
PdalNP2.PR Dall's porpoisePhocoenoides dalli
PdalNP1.PR Dall's porpoisePhocoenoides dalli
PdalNP7.PR Dall's porpoisePhocoenoides dalli
PdalNP8.PR Dall's porpoisePhocoenoides dalli
PdalNP9.PR Dall's porpoisePhocoenoides dalli
PdalNP0.PR Dall's porpoisePhocoenoides dalli
AdioTF5.PR spectacled porpoiseAustralophocaena dioptrica
Outgroup sequences
IDNameGroup
DleuAR7.WL BelugaDelphinapterus leucas