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DNA Surveillance

Species identification with DNA
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Search Cluster (Simple) Cluster (Advanced) Maximum Likelihood Example Data

General details for dataset 'Ziph Ctrl Vs4.3'

Loci: mtDNA control Region (=D-Loop)
Domain: Ziphiidae Vs4.3
Alignment: 114 sequences, 477 sites
Alignment scoring
-ACGT
A1.0-2.0-1.0-2.0
C-2.01.0-2.0-1.0
G-1.0-2.01.0-2.0
T-2.0-1.0-2.01.0
Create/extend = -3.0/-1.7
Substitution model
-ACGT
A-1.02.01.0
C1.0-1.02.0
G2.01.0-1
T1.02.01-
(A,G,C,T) = (0.30751, 0.22645, 0.13893, 0.32711)

Sequence details

Main sequences
IDNameGroup
BarNMNZ1801 Arnoux's beakedBerardius arnuxii
BarNMNZ528 Arnoux's beakedBerardius arnuxii
BarNZ02.MD Arnoux's beakedBerardius arnuxii
BarNZ03 Arnoux's beakedBerardius arnuxii
BarPEM28 Arnoux's beakedBerardius arnuxii
BarSAM5012 Arnoux's beakedBerardius arnuxii
BbaBC9220 Baird's beakedBerardius bairdii
BbaJ00-16 Baird's beakedBerardius bairdii
BbaJ02-018 Baird's beakedBerardius bairdii
BbaJ98C18 Baird's beakedBerardius bairdii
BbaJa9859 Baird's beakedBerardius bairdii
BbaSW4965 Baird's beakedBerardius bairdii
HamLB71-123C northern bottlenoseHyperoodon ampullatus
HamLB71-150B northern bottlenoseHyperoodon ampullatus
HamSH9601A northern bottlenoseHyperoodon ampullatus
HamSH9705B northern bottlenoseHyperoodon ampullatus
HamSH9711D northern bottlenoseHyperoodon ampullatus
HamSH9717D northern bottlenoseHyperoodon ampullatus
HplMV05 southern bottlenoseHyperoodon planifrons
HplNMNZ1806 southern bottlenoseHyperoodon planifrons
HplNMNZ1878 southern bottlenoseHyperoodon planifrons
HplNZ01.MD southern bottlenoseHyperoodon planifrons
HplNZ02 southern bottlenoseHyperoodon planifrons
HplNZ04.MD southern bottlenoseHyperoodon planifrons
IpaMal001 Longman's beakedIndopacetus pacificus
IpaQMJ2106 Longman's beakedIndopacetus pacificus
IpMZUF1956 Longman's beakedIndopacetus pacificus
LAM088901 Perrin's beakedMesoplodon perrini
MbiNHM-UK Sowerby's beakedMesoplodon bidens
MbiSAC13093 Sowerby's beakedMesoplodon bidens
MbiSAC1880 Sowerby's beakedMesoplodon bidens
MbiSW20 Sowerby's beakedMesoplodon bidens
MbiSW3854 Sowerby's beakedMesoplodon bidens
MbiSW3858 Sowerby's beakedMesoplodon bidens
MboNMNZ619 Andrews' beakedMesoplodon bowdoini
MbowNZ04 Andrews' beakedMesoplodon bowdoini
MboSAM18047 Andrews' beakedMesoplodon bowdoini
MbowWAM49602 Andrews' beakedMesoplodon bowdoini
MbTMAG1593 Andrews' beakedMesoplodon bowdoini
McaBC92-41 Hubbs' beakedMesoplodon carlhubbsi
McaLACM-X Hubbs' beakedMesoplodon carlhubbsi
McaSW1127 Hubbs' beakedMesoplodon carlhubbsi
McaSW1154 Hubbs' beakedMesoplodon carlhubbsi
McaSW1547 Hubbs' beakedMesoplodon carlhubbsi
McaSW3804 Hubbs' beakedMesoplodon carlhubbsi
McaSW73 Hubbs' beakedMesoplodon carlhubbsi
MdeFP01 densebeakedMesoplodon densirostris
MdeNHMUK densebeakedMesoplodon densirostris
MdeNZ01.MD densebeakedMesoplodon densirostris
MdeNZ02 densebeakedMesoplodon densirostris
MdeSW4010 densebeakedMesoplodon densirostris
MdeUS98047 densebeakedMesoplodon densirostris
MeuSW2698 Gervais' beakedMesoplodon europaeus
MeuSW3853 Gervais' beakedMesoplodon europaeus
MeuSW4120 Gervais' beakedMesoplodon europaeus
MeuSW4121 Gervais' beakedMesoplodon europaeus
MeuSW7443 Gervais' beakedMesoplodon europaeus
Mgin01.MD ginkgo-toothed beakedMesoplodon ginkgodens
MginNZ03 ginkgo-toothed beakedMesoplodon ginkgodens
MginNZ04 ginkgo-toothed beakedMesoplodon ginkgodens
MginUSNM298237 ginkgo-toothed beakedMesoplodon ginkgodens
MgiTSM8744 ginkgo-toothed beakedMesoplodon ginkgodens
MgrH04 Gray's beakedMesoplodon grayi
MgrNZ05.MD Gray's beakedMesoplodon grayi
MgrNZ11.MD Gray's beakedMesoplodon grayi
MgrNZ29 Gray's beakedMesoplodon grayi
MgrSAM15813 Gray's beakedMesoplodon grayi
MgrWA01 Gray's beakedMesoplodon grayi
MheNZ02.MD Hector's beakedMesoplodon hectori
MheNZ9501 Hector's beakedMesoplodon hectori
MheSAM16387 Hector's beakedMesoplodon hectori
MheTAS Hector's beakedMesoplodon hectori
MheWA02 Hector's beakedMesoplodon hectori
MhNMNZ2173 Hector's beakedMesoplodon hectori
MlayNZ01 straptoothMesoplodon layardii
MlayNZ04 straptoothMesoplodon layardii
MlayNZ13 straptoothMesoplodon layardii
MlayS18078 straptoothMesoplodon layardii
MlaySA9788 straptoothMesoplodon layardii
MlaySAM16422 straptoothMesoplodon layardii
MmiPEM1114 True's beakedMesoplodon mirus
MmiSW4968 True's beakedMesoplodon mirus
MmiSW4972 True's beakedMesoplodon mirus
MmiWA28052 True's beakedMesoplodon mirus
MNHNC1156 spade-toothedMesoplodon traversii
MpeJCR1926 lesser beakedMesoplodon peruvianus
MpeLAM95654 lesser beakedMesoplodon peruvianus
MpeSW23629 lesser beakedMesoplodon peruvianus
MpiTMMCC75 Perrin's beakedMesoplodon perrini
MstSW10402 Stejneger's beakedMesoplodon stejnegeri
MstSW4962 Stejneger's beakedMesoplodon stejnegeri
MstSW6481 Stejneger's beakedMesoplodon stejnegeri
MstSW9491 Stejneger's beakedMesoplodon stejnegeri
MstTSM30135 Stejneger's beakedMesoplodon stejnegeri
MstUSNM504345 Stejneger's beakedMesoplodon stejnegeri
Mtrav-MGM spade-toothedMesoplodon traversii
MtrNMNZ546 spade-toothedMesoplodon traversii
PEM1960 Longman's beakedIndopacetus pacificus
PEM292 Longman's beakedIndopacetus pacificus
TshNZ01.MD Shepherd's beakedTasmacetus shepherdi
TshNZ02.MD Shepherd's beakedTasmacetus shepherdi
TshNZ04 Shepherd's beakedTasmacetus shepherdi
TshNZ05 Shepherd's beakedTasmacetus shepherdi
TshNZ06 Shepherd's beakedTasmacetus shepherdi
USNM504259 Perrin's beakedMesoplodon perrini
USNM504260 Perrin's beakedMesoplodon perrini
USNM504853 Perrin's beakedMesoplodon perrini
ZcavHapA Cuvier's beakedZiphius cavirostris
ZcavHapE Cuvier's beakedZiphius cavirostris
ZcavHapS Cuvier's beakedZiphius cavirostris
ZcavHapT4 Cuvier's beakedZiphius cavirostris
ZcaNZ11.MD Cuvier's beakedZiphius cavirostris
ZcaSAC0356 Cuvier's beakedZiphius cavirostris
Outgroup sequences
IDNameGroup
KbreNZ01SP pygmy sperm whaleKogia breviceps