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DNA Surveillance

Species identification with DNA
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Search Cluster (Simple) Cluster (Advanced) Maximum Likelihood Example Data

General details for dataset 'World Psittacidae CHAVES endCOI'

Loci: Cytochrome Oxidase sub.1 (end)
Domain: World Psittacidae
Alignment: 125 sequences, 401 sites
Alignment scoring
-ACGT
A1.0-1.0-1.0-1.0
C-1.01.0-1.0-1.0
G-1.0-1.01.0-1.0
T-1.0-1.0-1.01.0
Create/extend = -2.9/-0.7
Substitution model
-ACGT
A-1.01.01.0
C1.0-1.01.0
G1.01.0-1
T1.01.01-
(A,G,C,T) = (0.25, 0.25, 0.25, 0.25)

Sequence details

IDNameGroupGenBank
H1_A.ochro H1_A.ochrocephalaSouth America?
H4_A.ochro H4_A.ochrocephalaSouth America?
H2_A.ochro H2_A.ochrocephalaSouth America?
H14_A.ochr H14_A.ochrocephalaSouth America?
H25_A.o.tr H25_A.o.tresmariae_CACentral America?
H24_A.o.be H24_A.o.belizensis_CACentral America?
H27_A.o.au H27_A.o.auropalliata_CACentral America?
H23_A.o.pa H23_A.o.panamensis_CACentral America?
H26_A.o.or H26_A.o.oratrix_CACentral America?
H20_A.ochr H20_A.ochrocephala_NSANorth America?
H21_A.ochr H21_A.ochrocephala_NSANorth America?
193734546 Poicephalus robustus 193734546Unspecified 193734546
354992437 Poicephalus senegalus 354992437Unspecified 354992437
193734564 Psittacus erithacus 193734564Unspecified 193734564
193734572 Rhynchopsitta pachyrhyncha 193734572Unspecified 193734572
193734468 Cyanoliseus patagonus 193734468Unspecified 193734468
302702038 Ara glaucogularis 302702038Unspecified 302702038
193734446 Ara macao 193734446Unspecified 193734446
302702042 Aratinga auricapillus 302702042Unspecified 302702042
302702060 Aratinga solstitialis 302702060Unspecified 302702060
193734444 Aratinga pertinax 193734444Unspecified 193734444
302702040 Aratinga aurea 302702040Unspecified 302702040
302702058 Aratinga nana 302702058Unspecified 302702058
354992401 Aratinga canicularis 354992401Unspecified 354992401
193734530 Orthopsittaca manilata 193734530Unspecified 193734530
193734482 Enicognathus leptorhynchus 193734482Unspecified 193734482
193734502 Leptosittaca branickii 193734502Unspecified 193734502
193734478 Diopsittaca nobilis 193734478Unspecified 193734478
354992453 Pyrrhura albipectus 354992453Unspecified 354992453
354992455 Pyrrhura hoffmanni 354992455Unspecified 354992455
302702082 Pyrrhura perlata 302702082Unspecified 302702082
193734570 Pyrrhura picta 193734570Unspecified 193734570
302702080 Primolius couloni 302702080Unspecified 302702080
302702044 Aratinga brevipes 302702044Unspecified 302702044
354992403 Aratinga finschi 354992403Unspecified 354992403
302702052 Aratinga holochlora 302702052Unspecified 302702052
302702046 Aratinga chloroptera 302702046Unspecified 302702046
302702048 Aratinga euops 302702048Unspecified 302702048
302702056 Aratinga mitrata 302702056Unspecified 302702056
302702062 Aratinga wagleri 302702062Unspecified 302702062
193734476 Deroptyus accipitrinus 193734476Unspecified 193734476
193734538 Pionites melanocephalus 193734538Unspecified 193734538
354992393 Agapornis canus 354992393Unspecified 354992393
193734436 Agapornis roseicollis 193734436Unspecified 193734436
193734504 Loriculus galgulus 193734504Unspecified 193734504
354992427 Loriculus vernalis 354992427Unspecified 354992427
354992425 Loriculus philippensis 354992425Unspecified 354992425
193734474 Cyclopsitta diophthalma 193734474Unspecified 193734474
193734562 Psittaculirostris edwardsii 193734562Unspecified 193734562
302702072 Graydidascalus brachyurus 302702072Unspecified 302702072
354992461 Triclaria malachitacea 354992461Unspecified 354992461
50981596 Pionopsitta pileata 50981596Unspecified 50981596
193734500 Hapalopsittaca amazonina 193734500Unspecified 193734500
302702074 Hapalopsittaca melanotis 302702074Unspecified 302702074
50981582 Pionopsitta caica 50981582Unspecified 50981582
193734540 Pionopsitta caica 193734540Unspecified 193734540
50981566 Pionopsitta vulturina 50981566Unspecified 50981566
50981572 Pionopsitta barrabandi 50981572Unspecified 50981572
50981586 Pionopsitta haematotis 50981586Unspecified 50981586
50981592 Pionopsitta haematotis 50981592Unspecified 50981592
50981598 Pionopsitta pulchra 50981598Unspecified 50981598
50981604 Pionopsitta pulchra 50981604Unspecified 50981604
50981606 Pionus chalcopterus 50981606Unspecified 50981606
302702078 Pionus senilis 302702078Unspecified 302702078
50981594 Pionus menstruus 50981594Unspecified 50981594
354992419 Eos histrio 354992419Unspecified 354992419
193734486 Eos reticulata 193734486Unspecified 193734486
193734558 Pseudeos fuscata 193734558Unspecified 193734558
354992415 Chalcopsitta cardinalis 354992415Unspecified 354992415
193734458 Chalcopsitta duivenbodei 193734458Unspecified 193734458
354992449 Psitteuteles goldiei 354992449Unspecified 354992449
193734522 Neopsittacus musschenbroekii 193734522Unspecified 193734522
354992423 Forpus modestus sclateri 354992423Unspecified 354992423
193734492 Forpus passerinus 193734492Unspecified 193734492
193734508 Melopsittacus undulatus 193734508Unspecified 193734508
193734550 Prioniturus luconensis 193734550Unspecified 193734550
354992439 Prioniturus montanus 354992439Unspecified 354992439
193734450 Bolbopsittacus lunulatus 193734450Unspecified 193734450
334866568 Pezoporus wallicus 334866568Unspecified 334866568
334866564 Pezoporus wallicus flaviventris 334866564Unspecified 334866564
334866566 Pezoporus occidentalis 334866566Unspecified 334866566
193734438 Alisterus amboinensis 193734438Unspecified 193734438
334866572 Polytelis anthopeplus 334866572Unspecified 334866572
193734548 Polytelis alexandrae 193734548Unspecified 193734548
354992407 Brotogeris chrysoptera 354992407Unspecified 354992407
193734452 Brotogeris jugularis 193734452Unspecified 193734452
302702066 Brotogeris versicolurus 302702066Unspecified 302702066
193734566 Psittrichas fulgidus 193734566Unspecified 193734566
193734510 Micropsitta finschii 193734510Unspecified 193734510
354992431 Micropsitta pusio 354992431Unspecified 354992431
193734520 Neopsephotus bourkii 193734520Unspecified 193734520
334866556 Barnardius barnardi 334866556Unspecified 334866556
193734448 Barnardius zonarius 193734448Unspecified 193734448
193734544 Platycercus adscitus 193734544Unspecified 193734544
334866570 Platycercus elegans 334866570Unspecified 334866570
354992441 Psephotus chrysopterygius 354992441Unspecified 354992441
193734568 Purpureicephalus spurius 193734568Unspecified 193734568
193734556 Psephotus varius 193734556Unspecified 193734556
334866576 Psephotus haematonotus 334866576Unspecified 334866576
193734526 Northiella haematogaster 193734526Unspecified 193734526
193734512 Myiopsitta monachus 193734512Unspecified 193734512
193734472 Cyanoramphus auriceps 193734472Unspecified 193734472
354992421 Eunymphicus cornutus 354992421Unspecified 354992421
334866562 Lathamus discolor 334866562Unspecified 334866562
193734554 Prosopeia tabuensis 193734554Unspecified 193734554
334866578 Psittacella brehmii 334866578Unspecified 334866578
334866580 Psittacella picta 334866580Unspecified 334866580
193734518 Neophema elegans 193734518Unspecified 193734518
354992433 Neophema pulchella 354992433Unspecified 354992433
193734466 Coracopsis vasa 193734466Unspecified 193734466
193734494 Geoffroyus heteroclitus 193734494Unspecified 193734494
354992443 Bolborhynchus aymara 354992443Unspecified 354992443
302702064 Bolborhynchus lineola 302702064Unspecified 302702064
193734516 Nannopsittaca panychlora 193734516Unspecified 193734516
193734582 Touit batavicus 193734582Unspecified 193734582
354992457 Touit purpuratus 354992457Unspecified 354992457
354992447 Psittacula roseata 354992447Unspecified 354992447
193734480 Eclectus roratus 193734480Unspecified 193734480
193734560 Psittacula columboides 193734560Unspecified 193734560
354992451 Psittinus cyanurus 354992451Unspecified 354992451
193734578 Tanygnathus lucionensis 193734578Unspecified 193734578
354992445 Psittacula krameri 354992445Unspecified 354992445
193734524 Nestor notabilis 193734524Unspecified 193734524
193734576 Strigops habroptilus 193734576Unspecified 193734576
354992413 Callocephalon fimbriatum 354992413Unspecified 354992413