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DNA Surveillance

Species identification with DNA
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Search Cluster (Simple) Cluster (Advanced) Maximum Likelihood Example Data

General details for dataset 'Bps1 16S NCBI'

Loci: 16S Ribosomal
Domain: Brazilian Psittacidae v1.0 (non curated)
Alignment: 62 sequences, 828 sites
Alignment scoring
-ACGT
A1.0-1.0-1.0-1.0
C-1.01.0-1.0-1.0
G-1.0-1.01.0-1.0
T-1.0-1.0-1.01.0
Create/extend = -2.9/-0.7
Substitution model
-ACGT
A-1.01.01.0
C1.0-1.01.0
G1.01.0-1
T1.01.01-
(A,G,C,T) = (0.25, 0.25, 0.25, 0.25)

Sequence details

IDNameGroupGenBank
31074359 Ara araraunaAra 31074359
71648637 Ara araraunaAra 71648637
3169216 Amazona aestivaAmazona 3169216
31074358 Amazona aestivaAmazona 31074358
3169242 Melopsittacus undulatusMelopsittacus 3169242
31074364 Melopsittacus undulatusMelopsittacus 31074364
3169246 Pionus menstruusPionus 3169246
31074362 Pionus menstruusPionus 31074362
31074363 Aratinga aureaAratinga 31074363
71648638 Aratinga aureaAratinga 71648638
3169226 Anodorhynchus hyacinthinusAnodorhynchus 3169226
31074360 Anodorhynchus hyacinthinusAnodorhynchus 31074360
3169230 Cyanopsitta spixiiCyanopsitta 3169230
33321187 Cyanopsitta spixiiCyanopsitta 33321187
33321188 Cyanopsitta spixiiCyanopsitta 33321188
33341564 Deroptyus accipitrinusDeroptyus 33341564
71648640 Deroptyus accipitrinusDeroptyus 71648640
3169238 Guaruba guaroubaGuaruba 3169238
71648648 Guaruba guaroubaGuaruba 71648648
33341565 Nandayus nendayNandayus 33341565
71648641 Nandayus nendayNandayus 71648641
3169250 Pyrrhura pictaPyrrhura 3169250
33341566 Pyrrhura pictaPyrrhura 33341566
37784289 Aratinga solstitialisAratinga 37784289
37784290 Aratinga solstitialisAratinga 37784290
37784291 Aratinga solstitialisAratinga 37784291
37784292 Aratinga solstitialisAratinga 37784292
33341563 Myiopsitta monachusMyiopsitta 33341563
71648647 Myiopsitta monachusMyiopsitta 71648647
33341546 Anodorhynchus leariAnodorhynchus 33341546
33341547 Anodorhynchus leariAnodorhynchus 33341547
33341548 Ara severaAra 33341548
33341549 Ara severaAra 33341549
33341552 Aratinga cactorumAratinga 33341552
33341553 Aratinga cactorumAratinga 33341553
33341550 Aratinga leucophthalmusAratinga 33341550
71648643 Aratinga leucophthalmusAratinga 71648643
33341555 Diopsittaca nobilisDiopsittaca 33341555
71648644 Diopsittaca nobilisDiopsittaca 71648644
33341557 Orthopsittaca manilataOrthopsittaca 33341557
71648645 Orthopsittaca manilataOrthopsittaca 71648645
33341559 Primolius auricollisPrimolius 33341559
71648646 Primolius auricollisPrimolius 71648646
33341567 Primolius couloniPrimolius 33341567
33341560 Primolius maracanaPrimolius 33341560
33341561 Primolius maracanaPrimolius 33341561
37784305 Aratinga weddelliiAratinga 37784305
37784306 Aratinga weddelliiAratinga 37784306
37784307 Aratinga weddelliiAratinga 37784307
37784308 Aratinga weddelliiAratinga 37784308
37784293 Aratinga auricapillaAratinga 37784293
37784294 Aratinga auricapillaAratinga 37784294
37784295 Aratinga auricapillaAratinga 37784295
37784296 Aratinga auricapillaAratinga 37784296
37784297 Aratinga auricapillaAratinga 37784297
37784298 Aratinga auricapillaAratinga 37784298
37784299 Aratinga auricapillaAratinga 37784299
37784300 Aratinga jandayaAratinga 37784300
37784301 Aratinga jandayaAratinga 37784301
37784302 Aratinga jandayaAratinga 37784302
37784303 Aratinga jandayaAratinga 37784303
37784304 Aratinga jandayaAratinga 37784304