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DNA Surveillance

Species identification with DNA
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Search Cluster (Simple) Cluster (Advanced) Maximum Likelihood Example Data

General details for dataset 'Humpback Vs4.0'

Loci: mtDNA control Region (=D-Loop)
Domain: Humpbacks Vs4.0
Alignment: 24 sequences, 590 sites
Alignment scoring
-ACGT
A1.0-1.0-1.0-1.0
C-1.01.0-1.0-1.0
G-1.0-1.01.0-1.0
T-1.0-1.0-1.01.0
Create/extend = -3.0/-1.0
Substitution model
-ACGT
A-1.02.01.0
C1.0-1.02.0
G2.01.0-1
T1.02.01-
(A,G,C,T) = (0.30751, 0.22645, 0.13893, 0.32711)

Sequence details

Main sequences
IDNameGroup
F1+T F1+TMegaptrea novaeangliae
F1+2T F1+2TMegaptrea novaeangliae
F1+C F1+CMegaptrea novaeangliae
F2+G F2+GMegaptrea novaeangliae
F2+C F2+CMegaptrea novaeangliae
F2-C(X3) F2-C(X3)Megaptrea novaeangliae
FX1 FX1Megaptrea novaeangliae
EX4 EX4Megaptrea novaeangliae
E1 E1Megaptrea novaeangliae
E1+C2 E1+C2Megaptrea novaeangliae
EX5 EX5Megaptrea novaeangliae
E2 E2Megaptrea novaeangliae
E3+C E3+CMegaptrea novaeangliae
E1+C3 E1+C3Megaptrea novaeangliae
E1+C1 E1+C1Megaptrea novaeangliae
E1+A E1+AMegaptrea novaeangliae
AX7 AX7Megaptrea novaeangliae
A+C A+CMegaptrea novaeangliae
A+ A+Megaptrea novaeangliae
A- A-Megaptrea novaeangliae
A-1 A-1Megaptrea novaeangliae
A+1 A+1Megaptrea novaeangliae
AX9 AX9Megaptrea novaeangliae
Outgroup sequences
IDNameGroup
Fin Fin WhaleUnspecified