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DNA Surveillance

Species identification with DNA

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Search Cluster (Simple) Cluster (Advanced) Maximum Likelihood Example Data

General details for dataset 'All Amazona end COI e CHAVES'

Loci: Cytochrome Oxidase sub.1 (end)
Domain: All Amazona species + (Chaves et al.)
Alignment: 40 sequences, 401 sites
Alignment scoring
-ACGT
A1.0-1.0-1.0-1.0
C-1.01.0-1.0-1.0
G-1.0-1.01.0-1.0
T-1.0-1.0-1.01.0
Create/extend = -2.9/-0.7
Substitution model
-ACGT
A-1.01.01.0
C1.0-1.01.0
G1.01.0-1
T1.01.01-
(A,G,C,T) = (0.25, 0.25, 0.25, 0.25)

Sequence details

IDNameGroupGenBank
H1_A.ochro H1_A.ochrocephala/aestiva_clade1_SASouth America?
H4_A.ochro H4_A.ochrocephala/aestiva_clade1_SASouth America?
H2_A.ochro H2_A.ochrocephala/aestiva_clade2_SASouth America?
H14_A.ochr H14_A.ochrocephala/aestiva_clade2_SASouth America?
H20_A.ochr H20_A.ochrocephala_NSANorth America?
H21_A.ochr H21_A.ochrocephala_NSANorth America?
H23_A.o.pa H23_A.o.panamensis_CACentral America?
H25_A.o.tr H25_A.o.tresmariae_CACentral America?
H24_A.o.be H24_A.o.belizensis_CACentral America?
H27_A.o.au H27_A.o.auropalliata_CACentral America?
H26_A.o.or H26_A.o.oratrix_CASouth America?
193734440 Amazona viridigenalis 193734440Unspecified 193734440
354992397 Amazona farinosa 354992397Unspecified 354992397
34536960 Amazona albifrons albifrons 34536960Unspecified 34536960
34536962 Amazona albifrons nana 34536962Unspecified 34536962
34536964 Amazona albifrons saltuensis 34536964Unspecified 34536964
34537026 Amazona ventralis 34537026Unspecified 34537026
34537034 Amazona vittata 34537034Unspecified 34537034
34536982 Amazona collaria 34536982Unspecified 34536982
34536958 Amazona agilis 34536958Unspecified 34536958
34536994 Amazona festiva bodini 34536994Unspecified 34536994
34537030 Amazona vinacea 34537030Unspecified 34537030
34537020 Amazona pretrei 34537020Unspecified 34537020
34537024 Amazona tucumana 34537024Unspecified 34537024
34537002 Amazona kawalli 34537002Unspecified 34537002
34536966 Amazona amazonica 34536966Unspecified 34536966
34536998 Amazona guildingii 34536998Unspecified 34536998
34537000 Amazona imperialis 34537000Unspecified 34537000
37780832 Amazona autumnalis 37780832Unspecified 37780832
34536974 Amazona autumnalis autumnalis 34536974Unspecified 34536974
34536976 Amazona autumnalis lilacine 34536976Unspecified 34536976
34536996 Amazona finschi 34536996Unspecified 34536996
34536984 Amazona dufresniana 34536984Unspecified 34536984
34537022 Amazona rhodocorytha 34537022Unspecified 34537022
37780862 Amazona farinosa 37780862Unspecified 37780862
34536988 Amazona farinosa guatemalae 34536988Unspecified 34536988
34536986 Amazona farinosa farinosa 34536986Unspecified 34536986
34536990 Amazona farinosa inornata 34536990Unspecified 34536990
34536968 Amazona arausiaca 34536968Unspecified 34536968
34537028 Amazona versicolor 34537028Unspecified 34537028