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DNA Surveillance

Species identification with DNA
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Search Cluster (Simple) Cluster (Advanced) Maximum Likelihood Example Data

General details for dataset 'References'

Loci: Cytochrome B
Domain: Meats
Alignment: 28 sequences, 1146 sites
Alignment scoring
-ACGT
A1.0-1.0-1.0-1.0
C-1.01.0-1.0-1.0
G-1.0-1.01.0-1.0
T-1.0-1.0-1.01.0
Create/extend = -3.0/-1.0
Substitution model
-ACGT
A-1.01.01.0
C1.0-1.01.0
G1.01.0-1
T1.01.01-
(A,G,C,T) = (0.25, 0.25, 0.25, 0.25)

Sequence details

Main sequences
IDNameGroupSpeciesGenbank AccessionSearch Wikipedia
seq1 cowcowBos taurus NC_006853 cow
seq2 sheepsheepOvis aries NC_001941 sheep
seq3 goatgoatCapra hircus NC_005044 goat
seq4 horsehorseEquus caballus NC_001640 horse
seq5 donkeydonkeyEquus asinus NC_001788 donkey
seq6 llamallamaLama glama AY535253 llama
seq7 alpacaalpacaLama pacos AJ566364 alpaca
seq8 Bactrian camelBactrian camelCamelus bactrianus NC_009629 Bactrian+camel
seq9 dromedarydromedaryCamelus dromedarius NC_009849 dromedary
seq10 pigpigSus scrofa NC_000845 pig
seq11 dogdogCanis familiaris NC_002008 dog
seq12 catcatFelis catus NC_001700 cat
seq13 harbour sealsealPhoca vitulina NC_001325 harbour+seal
seq14 black bearbearUrsus americanus X82307 black+bear
seq15 minke whalem whaleBalaenoptera acutorostrata NC_005271 minke+whale
seq16 humpback whaleh whaleMegaptera novaeangliae NC_006927 humpback+whale
seq17 ostrichostrichStruthio camelus NC_002785 ostrich
seq18 emuemuDromaius novaehollandiae NC_002784 emu
seq19 turkeyturkeyMeleagris gallopavo NC_010195 turkey
seq20 pheasantpheasantPhasianus colchicus AY368060 pheasant
seq21 duckduckAnas platyrhynchos NC_009684 duck
seq22 green seaturtleturtleChelonia mydas NC_000886 green+turtle
seq23 chickenchickenGallus gallus NC_001323 chicken
seq24 pigeonpigeonColumba livia AF182694 pigeon
seq25 boa constrictorboaBoa constrictor NC_007398 boa+constrictor
seq26 rattlesnakerattlesnakeCrotalus viridis AF471066 rattlesnake
seq27 ratratRattus norvegicus NC_001665 Norway+rat
Outgroup sequences
IDNameGroup SpeciesGenbank AccessionSearch Wikipedia
seq28 African clawed frogfrogXenopus laevis NC_001573 African+clawed+frog