title logo

DNA Surveillance

Species identification with DNA

Brazilian Parrots Home About How to Use The Science Links and Publications Data Ownership
Search Cluster (Simple) Cluster (Advanced) Maximum Likelihood Example Data

Example Data

Would you like to try DNA Surveillance but don't have any DNA sequences?

To try a sequence:

  1. Select the sequence, including the FASTA header line (e.g., >Unknown 1) and copy it to the Clipboard.
  2. Go to the Simple Search link.
  3. Paste the sequence in the Data Entry window.
  4. Click the appropriate button to select the taxonomic group of interest, for the indicated loci.
  5. Click the Submit button.
Wait a few seconds before you click the "Retrieve Results" button to retrieve the results of the phylogenetic analysis.

Our species identification can be viewed by clicking on the related 'Answer' link for each example.


Suspicious Polly (COI) (loci='Cytochrome Oxidase sub.1 (end)')

> Unidentified 0
GCCTACCATGCAGGTAAAAAGGAACCATTTGGCTACATGGGCATAGTGTGGGCAATACTA
TCAATCGGATTCCTAGGGTTCATTGTATGGGCCCATCACATATTCACAGTGGGAATAGAC
GTAGACACCCGAGCATACTTCACATCTGCCACCATAATTATCGCCATCCCAACGGGAATT
AAGGTTTTCAGCTGATTAGCCACACTACATGGAGGGACAATCAAATGAGACCCCCCCATA
CTATGGGCCCTCGGATTCATCTTCCTATTCACTATCGGAGGCCTTACAGGAATCGTCCTA
GCAAACTCCTCACTAGACATTGCCCTACACGACACATACTACGTAGTAGCACACTTCCAC
TATGTCCTGTCAATGGGTGCTGTGTTCGCTATCCTGGCAGGGCTCACCCACTGATTCCCC

Answer

Suspicious Polly (16S) (loci='16S Ribosomal')

> Unidentified 1
CCTACCGAGCCGGGTGATAGCTGGTTGCCTGCAAAACGAATCTAAGTTCCCCCTTAACCC
CTTTCCCCCCCGACAAACCCAACCCGAATGTAATAGTTAAGGGCTATTTAAAGGGGGTAC
AGCCCCTTTAAAAAAGGACACAACCTCCACCAGCGGATAACCCCCGTACATCCAACCCGG
TGGGCCTTAAAGCAGCCACCCCCAAAGATTGCGTCAAAGCTCCATCAACTAAAAACCCCC
AAAACCAATGCGACTCCCTACATCCACAGCAGGCCAACCTATAACAATAGATGAATTAAT
GCTAGAACGAGTAACCAGGACACCACGTCCCCCCAAGCGCTAGCCTACACACCATTAACA
GCAAAACCTCAATAATAACTACCCACCGTTGAACACACCCTGTCAACCCAACTCAGGAGC
GCACACTGGAGTGATCAAAGTCTACAAAAGGAACTCGGCAAACCTAAGGCCCGACTGTTT
ACCAAAAACATAGCCTTCAGCCAAACAAGTATTGAAGGTGATGCCTGCCCGGTGACATCA
TGTTTAACGGCCGCGGTATCCTAACCGTGCAAAGGTAGCGCAATCAATTGTCCCATAAAT
CGAGACCTGTATGAATGGCTAAACGAGGCCTTAGCTGTCTCCTGTAGACAATCGGTGAAA
CTGATCTCTCTGTACAAAAGCAGAGATAAGCACATAAGACGAGAAGACCCTGTGGAACTT
TAAAAATCAATAGCCACCCCACCCAACTCACTAGCCTACCTGGGCCCACCACCTAAGACA

Answer

Suspicious Polly (ND2) (loci='NADH dehydrogenase subunit 2')

> Unidentified 2
TAATCTCAACCCTAAGCATCCTACTAGGAACAACAATCACAATCACAAGTAACCACTGAA
CCACAGCTTGGGCAGGACTAGAAATCAACACCCTATCAATCATCCCTATAATCTCAAAAT
CCCACCACCCACGGGCTATCGAAGCTGCAACCAAATACTTCCTAGTACAAGCAGCCGCTT
CCACACTAATACTCTTCTCAAGTACAATCAACGCATGACACACAGGACAATGAGACATCG
CCCAACTCACCTACCCTCCAGCATGCCTCCTACTAACCACCGCAATTGCTACCAAACTAG
GCCTAGCCCCATTCCACTTTTGATTTCCAGAAGTACTACAAGGATCATCCCTTACCACAG
CCCTACTCCTCTCAACAATCATAAAACTCCCACCAACCACACTCCTACTCATCACATCCC
ATTCACTAAACCCCATCCTACTCACTACCATGTCCATCATATCCATCATCCTAGGAGGCT

Answer

Suspicious Polly (CR) (loci='Control Region')

> Unidentified 3
AGGTAGCCCCCCCTACCCCCCCACAATCGTGGGTCTATTTACTTAGCTCTAGACTATGTA
TATCGTGCATTTAGTAATTATGCCCTAGACATCATATTAAACCATCGAAGACTAAATAAT
TTATGCTCTAATGACATATATTGTATTATCGGATTAAGTCATGGTACCGCTCGGCTCTAC
CCCAAGGATTGGGAAACTCCATGATTGATGATAAGCAAGCTTTATGATCTAGGTCAAAGT
ACAGCTCTCTTTAACTTTACTGGTTTAGTATACGGAAGTGCTCTAGTACAAGAACTTAAT
GTCCTAAGCCATATACTGGGACTCTTTACATCTATCACTTGCAACACACGGAAGTGCTCT
AGTACAAAGGACTTATCGGCCCGCCCATAATTGGCCCGGGAACTTTCTTATCCCGTAAGA
CTCGTTTCAGGAGCCCGGTTATTTATTAGTCTGACTACTCACGAGAGATCACCAACCCGG
TGTAAGTAAGGTTCGGCGTTCCCAGCGTCAGGTCCATTCTTTCCCCCTACACCCTTACAC
ATCTTGCGCTTTTGCGCCTCTGGTTCCTCGGTCAGGCACATAAATCGGTTCACTCACCTT
ACATTTCTATCGGGTCATCTGGTTCGCTATCCTGGTACTCCCTACCTCGTAATCGCGACA
TCTCCAGTGTCTCTTCGCCTTTGGTTCTCTTTTTTGGGGTCACCTCACTCTACATTTCCA
GTGCAATGGGTACACAATTGGTTGACATGGACATACAATCCATAGCGAACCCTTTTTTGG
CCTTCTAGAATAAATTAATGATACGGTTTCAGGTGTGGGTTCGTCTCATTTTCGCACTGA
TGCACTTGCTCCCCCATTCGGTTATGCCCGTTTCACATCTCTTTCCCGCAGTATTTCTTA

Answer

Suspicious Polly (CytB) (loci='Cytochrome B')

> Unidentified 4
CTAACCGGCCTACTCCTAGCCGCTCACTACACTGCAGACACTTCTCTAGCTTTCTCATCC
GTAGCTAATACATGCCGAAATGTACAATACGGTTGACTAATCCGAAATCTCCACGCAAAC
GGAGCCTCATTCTTCTTCATCTGCATTTACCTCCACATTGCTCGAGGTTTCTACTATGGT
TCATACCTGTATAAAGAAACCTGAAACACAGGTATCATCCTCCTACTCACCCTTATAGCC
ACAGCCTTTGTTGGCTATGTACTACCATGAGGCCAAATATCCTTCTGAGGGGCTACAGTA
ATTACAAACCTATTCTCAGCCATCCCTTATGTTGGCCACACCCTGGTGGAATGGGCCTGA
GGTGGGTTCTCCGTAGACAACCCCACCCTAACACGATTCTTCACCCTACATTTCCTCCTT
CCGTTCCTAATCACAAGCCTAGTCCTCATCCACCTAACCTTCCTACACGAATCAGGGTCA
AACAACCCCCTAGGTATCCCCTCAAACTGTGACAAAATCCCATTCCACCCTTACTTCTCC
CTAAAAGATCTGTTGGGGTTCACAATCATGCTATTTCTAGTCACCACCCTTGCCCTATTC
TCCCCCAACCTACTAGGAGACCCCGAAAACTTCACCCCAGCAAACCCCCTAGTAACCCCC
CCACACATCAAACCAGAATGATACTTCCTCTTTGTATATGCAATCCTACGCTCAATCCCC
AACAAATTAGGGGGTGTCCTAGCCCTAGCCGCCTCCGTACTAATCCTATTCTTAAGCCCC
CTACTACACAATTCCAAACAACGAGCCATAACCTTTCGCCCTATGTCCCAACTCTTATTC
TGAACACTAGCTGCCAACTTATTTATTCTAACATGAATCGGAAGCCAACCAGTAGAACAT
CCCTTCATCATCATTGGACAACTAGCCTCATTAACCTACTTCACCATCATCCTAATCCTA

Answer

[Top]

11 March 2005